Insertion junction: CLIP2.024418_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.024418
Chromosome:chromosome 2
Location:7450946
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g392319 VSP6 (1 of 8) PTHR11339//PTHR11339:SF290 - EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED // PROTEIN T26A8.1; Hydroxyproline-rich cell wall glycoprotein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCGGTTGCACTCACGAGGGGGTGTTGCGGCACTCCTGCAAAAAGAGCTG
Internal bar code:GGTGTATTTGTACCGACTGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2235
LEAP-Seq percent confirming:44.4444
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:CCCATCTTTGGTGACGTGGA
Suggested primer 2:CATGTGGCCGTAGAAAGGGT