Insertion junction: CLIP2.024419_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.024419
Chromosome:chromosome 12
Location:9693865
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00235904
lncRNA_TCONS_00236465

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGTGTGGTTTTGGGACCTGTCATCTGTGGCGTATGGAGCACACACCGGT
Internal bar code:CTACAGGACTGAAGGTATAGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:3694
LEAP-Seq percent confirming:57.7778
LEAP-Seq n confirming:52
LEAP-Seq n nonconfirming:38
LEAP-Seq n unique pos:90

Suggested primers for confirmation by PCR

Suggested primer 1:TACAGTACGGCAGGGATGGA
Suggested primer 2:CATGCAACGCAGGTCAACAA