Insertion junction: CLIP2.024466_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.024466
Chromosome:chromosome 11
Location:4440581
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g483351 PHC44 Putative pherophorin-chlamydomonas homolog; (1 of 1) IPR003072//IPR003882//IPR024616 - Orphan nuclear receptor, NOR1 type // Pistil-specific extensin-like protein // Pherophorin intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGTGTGCAGCAGTGCCAACGGTGTGTTTGGCCCCCTTTGCTCCTCTCAG
Internal bar code:TTGGCTCTGGTAGACATCTTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:695
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:AGCATCTGACACACTCAGGC
Suggested primer 2:TACTCCCTGAGTCCTCTGGC