Insertion junction: CLIP2.024500_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.024500
Chromosome:chromosome 10
Location:798842
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g423050 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTCCTTCAGGGTCCTTGGCGTACCGCTCATGGGCTGTGGCTATGCGCTT
Internal bar code:GCTGGGAGCTTCGGGGCCGGCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1710
LEAP-Seq percent confirming:95.0
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:ACTTCTGTCAGTGTCGGCAG
Suggested primer 2:TCGTGCTTGGTATGCGAGTT