Insertion junction: CLIP2.024649_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.024649
Chromosome:chromosome 9
Location:1163341
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00140371

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCTCGCTGATCTCAGTTGCCAGTGCATCAATGTTAATATATATTATTAG
Internal bar code:GTCATACACCGTGATAGGGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1507
LEAP-Seq percent confirming:90.625
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:AGGCGCACAGTGTTCATACA
Suggested primer 2:CAATGCAGTTGGTGTGGGTG