Insertion junction: CLIP2.024692_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.024692
Chromosome:chromosome 10
Location:5692883
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g459350 OPR49,RAP5 OctotricoPeptide Repeat protein 49; (1 of 2) IPR000104//IPR013584 - Antifreeze protein, type I // RAP domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAACACTGCGCGCGAACAATTCCGCGATGCGGCGCCGTCTTCCGTCCTGC
Internal bar code:TAACTCTCAGGGGTCATTGGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:590
LEAP-Seq percent confirming:46.3415
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:22
LEAP-Seq n unique pos:41

Suggested primers for confirmation by PCR

Suggested primer 1:ATCTGTACGATGGCGCGATT
Suggested primer 2:TCTCCCCCATCACCTGTAGG