Insertion junction: CLIP2.024924_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.024924
Chromosome:chromosome 3
Location:485303
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g145007 intron
lncRNA_TCONS_00148410 intron
lncRNA_TCONS_00148950 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGTCGGGATATCCCGCAGCGGCGCGTCCACACGGGAAAGGGCAAGGCCC
Internal bar code:CCGTGTGGGGGCTTAGGGGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:5007
LEAP-Seq percent confirming:98.8235
LEAP-Seq n confirming:84
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:85

Suggested primers for confirmation by PCR

Suggested primer 1:CCAAACTCACCAGCAAGTGC
Suggested primer 2:TGCCAGGACTTGTGCACTAG