Insertion junction: CLIP2.025186_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.025186
Chromosome:chromosome 17
Location:880390
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g702400 PUS5 (1 of 1) 3.5.4.26//5.4.99.28 - Diaminohydroxyphosphoribosylaminopyrimidine deaminase // tRNA pseudouridine(32) synthase / Pseudouridine synthase RluA; RNA pseudouridine synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCACGCGCACACAACGCGCACTCACACTCCTGCCCTTACCTCGGCCATG
Internal bar code:GATCCTGGCGACGTCCGTTTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:5888
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:86
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:86

Suggested primers for confirmation by PCR

Suggested primer 1:ATCCCTGACTCTCTCGTGCT
Suggested primer 2:GCAAGGCTCTACACACAGGT