Insertion junction: CLIP2.025239_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.025239
Chromosome:chromosome 10
Location:6433624
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g464800 (1 of 22) PTHR11017//PTHR11017:SF145 - LEUCINE-RICH REPEAT-CONTAINING PROTEIN // SUBFAMILY NOT NAMED intron
Cre10.g801210 (1 of 68) 2.1.1.43 - Histone-lysine N-methyltransferase / Protein-lysine N-methyltransferase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCAATTGATACTGGCATAAGTTCACATCCCGTACGGCACACCCGCCCAC
Internal bar code:GGCTCTAGTAGTCGCTTCAGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1608
LEAP-Seq percent confirming:89.4737
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:38

Suggested primers for confirmation by PCR

Suggested primer 1:ACGACTTTCTGTTCCCCGAC
Suggested primer 2:GGAAATACCCCTGGTCCGTG