Insertion junction: CLIP2.025256_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.025256
Chromosome:chromosome 1
Location:3376377
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g021900 PUS11 (1 of 1) PTHR11142:SF10 - TRNA PSEUDOURIDINE SYNTHASE; RNA pseudouridine synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCAGGTGCCCGCGTGTGCAGCAGCCAGACGGCGGACTTGACCGCACCTG
Internal bar code:GAACACTGGTAAACTCAAAGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:2191
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:CAACTGTTCGGGGGCATTTG
Suggested primer 2:TCTGGAGGAGCGCAAAGAAG