Insertion junction: CLIP2.025415_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.025415
Chromosome:chromosome 7
Location:2985622
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g333350 CDS
lncRNA_TCONS_00245377 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCCCGGCTTGCATGTGCGCCAGAGCTACGCAGGTAGGCGGGGTGCTTCA
Internal bar code:GACACCTTGCCTTGCGCAGACT

Confirmation - LEAP-Seq

LEAP-Seq distance:2285
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:40
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:ATGGAGGCATTCGTAGCTCG
Suggested primer 2:GCAGCGCTAACGAATTCCAG