Insertion junction: CLIP2.025758_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.025758
Chromosome:chromosome 1
Location:4137563
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g027550 (1 of 3) PTHR24291//PTHR24291:SF54 - FAMILY NOT NAMED // PROTEIN LUTEIN DEFICIENT 5, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATGATTGTTTTAGAAGTGAAGGCGTAGCCAGGAAGGAGGGGGGCGGGGG
Internal bar code:AGTATAGGTTTTGCTTATTCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:203
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:ACCCCCGCCCTATTTCTTTG
Suggested primer 2:TACTTAAGGTGGGGGAGGGG