Insertion junction: CLIP2.025855_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.025855
Chromosome:chromosome 9
Location:5677055
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g410300 (1 of 1) PF00069//PF01593//PF07714//PF08766//PF13450 - Protein kinase domain (Pkinase) // Flavin containing amine oxidoreductase (Amino_oxidase) // Protein tyrosine kinase (Pkinase_Tyr) // DEK C terminal domain (DEK_C) // NAD(P)-binding Rossmann-like domain (NAD_binding_8) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACAATGCATATGGGTGCCACTCGGGGTCAGGTCGTTCGTCGATCGCCCG
Internal bar code:AGGTGCATATTGGCGTTTCTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:266
LEAP-Seq percent confirming:12.5
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:CCTTGACTGTAGCGCTCACA
Suggested primer 2:CGCCTACACACTTTTTGCCC