Insertion junction: CLIP2.025904_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.025904
Chromosome:chromosome 9
Location:1477677
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00140651

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCTTAGAAAGTTAATTACTTCAAGCGACAGCTTCCTCGCTTCACCTCTG
Internal bar code:GTGGTATACTAAATGGAACTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:951
LEAP-Seq percent confirming:9.09091
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:30
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:CCATGACGCGATGAAAGCTG
Suggested primer 2:GGTGGTGGTTGATGAGGGAG