Insertion junction: CLIP2.026705_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.026705
Chromosome:chromosome 2
Location:2887701
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g094900 (1 of 1) PTHR23083//PTHR23083:SF427 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR // SUBFAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCTTCCCCTCCTCCACACTCCGCCCTCCACACCCTGTGCCTGCCCGATT
Internal bar code:CCCGCGATGTACCCTGTTCATA

Confirmation - LEAP-Seq

LEAP-Seq distance:98
LEAP-Seq percent confirming:92.8571
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:TGCCGACTTCTACCACAACC
Suggested primer 2:GTACGGAACTTCACGCAAGC