Insertion junction: CLIP2.026808_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.026808
Chromosome:chromosome 3
Location:8233893
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g200050 CAL1 (1 of 2) PF13202//PF13833 - EF hand (EF-hand_5) // EF-hand domain pair (EF-hand_8); Calpain family cysteine protease CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTAGCATTGACATAGACAGGAGTGGCGAGCTGGACGTCAAGGAGCTGCA
Internal bar code:GCGCTCCGTTAAGTATTGAATT

Confirmation - LEAP-Seq

LEAP-Seq distance:1660
LEAP-Seq percent confirming:90.2439
LEAP-Seq n confirming:37
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:41

Suggested primers for confirmation by PCR

Suggested primer 1:ATGGAGGGCATGCGTTTGTA
Suggested primer 2:GTGTGACTGTCAACGTGCAC