Insertion junction: CLIP2.026927_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.026927
Chromosome:chromosome 3
Location:4441988
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g175500 (1 of 2) K05770 - benzodiazapine receptor (BZRP) 3'UTR
Cre03.g800331 CDS
lncRNA_TCONS_00070774 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGGTCATTTCGACAGAGACGAACAGGCAACGAATTGTTGCATAGGGTTA
Internal bar code:AGACCTGAAGAACGTCAATAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:3802
LEAP-Seq percent confirming:99.0385
LEAP-Seq n confirming:103
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:104

Suggested primers for confirmation by PCR

Suggested primer 1:CTTGCATTCATACCGTGCGG
Suggested primer 2:ATGAGGCTGTAAGTTGCGCT