Insertion junction: CLIP2.027044_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.027044
Chromosome:chromosome 2
Location:1797792
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g800183 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGACTTGCCGTCGTAGCTGACTTCTGGGGTCGTCTCCAGACGTTTGTGA
Internal bar code:ACGGCTCAGCTGCGCCGACGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:4305
LEAP-Seq percent confirming:83.7398
LEAP-Seq n confirming:103
LEAP-Seq n nonconfirming:20
LEAP-Seq n unique pos:123

Suggested primers for confirmation by PCR

Suggested primer 1:GCTCATATCGTCGTGGCTGA
Suggested primer 2:GTGGTCGCTGAAATGGGAGA