Insertion junction: CLIP2.027078_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.027078
Chromosome:chromosome 16
Location:1628610
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g654250 THB6 Truncated hemoglobin; (1 of 2) PTHR10681:SF17 - PEROXIREDOXIN-6 CDS
Cre16.g654300 NDK5,RSP23 (1 of 1) PF00334//PF00612//PF05186 - Nucleoside diphosphate kinase (NDK) // IQ calmodulin-binding motif (IQ) // Dpy-30 motif (Dpy-30); Radial Spoke Protein 23 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTGTACACGACCTGCGAGGCAAGCGGCCATGGAACCGCGAGGGAGCGCA
Internal bar code:GATGAGAGGAAGTTGGTTGATG

Confirmation - LEAP-Seq

LEAP-Seq distance:78
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:TTCGCAAGCTTTCAGGCAAC
Suggested primer 2:CGCGGCGTAATCAAATCGTT