Insertion junction: CLIP2.027139_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.027139
Chromosome:chromosome 14
Location:1197982
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00189783

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGACCGCTACATCAATCCAGCACAGCTCCTAGCACCACAGAGCCATCCTA
Internal bar code:ACTGGGCAGTCAGAGGGCCAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1338
LEAP-Seq percent confirming:5.55556
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:34
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:AGACTTGACATCACTGGGCG
Suggested primer 2:TTTCCCGCCGTGTTCATACA