Insertion junction: CLIP2.027180_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.027180
Chromosome:chromosome 12
Location:3813231
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g514750 CIS1 Citrate synthase, mitochondrial; (1 of 1) 2.3.3.1//2.3.3.16 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) // Citrate synthase (unknown stereospecificity) / Oxaloacetate transacetase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGGGGGCCGGCGGGGATAGGCAGGGGAAGTCAGGGAATAGTGCCGCAGC
Internal bar code:TGGAATTGTCCCGCGCTAAAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1954
LEAP-Seq percent confirming:91.6667
LEAP-Seq n confirming:33
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:CGAGGTGACCGTGGATATGG
Suggested primer 2:AAGACAAGTAGCACCGGTGG