Insertion junction: CLIP2.027205_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.027205
Chromosome:chromosome 13
Location:2785437
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g801538 (1 of 73) IPR000477//IPR005135 - Reverse transcriptase domain // Endonuclease/exonuclease/phosphatase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCAAGGTGCCAGTAGCTCTCATCTGAGCTTTCTGTCCTAACATATCCCG
Internal bar code:TTAAGGAGAGTGATCACGCCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:4228
LEAP-Seq percent confirming:67.4157
LEAP-Seq n confirming:60
LEAP-Seq n nonconfirming:29
LEAP-Seq n unique pos:89

Suggested primers for confirmation by PCR

Suggested primer 1:CTGAAGGCGAGGACGAGATC
Suggested primer 2:GTCCGAAACGTCACCCTTCT