Insertion junction: CLIP2.027222_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.027222
Chromosome:chromosome 9
Location:3613541
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g396846 (1 of 2) PTHR22957//PTHR22957:SF148 - TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN // RE26521P CDS
lncRNA_TCONS_00135978 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGAGGAGGTTCGGAAAGCTGGCGTCCCCGCTGGCCTCCGGGCGGATTTC
Internal bar code:ATTCGTTGGTATGACCTCGCCT

Confirmation - LEAP-Seq

LEAP-Seq distance:2519
LEAP-Seq percent confirming:98.1818
LEAP-Seq n confirming:54
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:55

Suggested primers for confirmation by PCR

Suggested primer 1:AAAACCGCTGGCCGATCTTA
Suggested primer 2:TTTGCACCACTCGCACATTG