Insertion junction: CLIP2.027270_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.027270
Chromosome:chromosome 17
Location:5502224
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g739250 FAP402 (1 of 2) IPR000014//IPR000719//IPR001245//IPR002290//IPR011009//IPR020635//IPR029016 - PAS domain // Protein kinase domain // Serine-threonine/tyrosine-protein kinase catalytic domain // Serine/threonine/dual specificity protein kinase, catalytic domain // Protein kinase-like domain // Tyrosine-protein kinase, catalytic domain // GAF domain-like; Flagellar Associated Protein Kinase 402 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACCATGGGGACGTGGGAAATAGGAAAGGCGGAGCGTTGCACATACTCCC
Internal bar code:TCATGCCTTGTTTCCTGGAATT

Confirmation - LEAP-Seq

LEAP-Seq distance:268
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:TGGCAGCTTTGTTCCGTTTG
Suggested primer 2:CAATACCCCCACGACACACA