Insertion junction: CLIP2.027391_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.027391
Chromosome:chromosome 12
Location:6577411
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00110013
lncRNA_TCONS_00110014

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATACTTGGTGCCCCTGATTCGGCATCACACGGCTGCTGACCAGTGCGGT
Internal bar code:AGCCTCGGATTCTGGCTTGATA

Confirmation - LEAP-Seq

LEAP-Seq distance:3690
LEAP-Seq percent confirming:94.1176
LEAP-Seq n confirming:32
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:34

Suggested primers for confirmation by PCR

Suggested primer 1:TTCGGTTGTAAGGCCCAGTC
Suggested primer 2:GTCAGGTGCTGTTGCTGTTG