Insertion junction: CLIP2.027564_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.027564
Chromosome:chromosome 7
Location:4595594
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g344200 (1 of 3) IPR000104//IPR020846 - Antifreeze protein, type I // Major facilitator superfamily domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGTCCAGCGGCCAGCTCCAGCGCGTAGACCCGCCGAAGGCTGCTGCTGCT
Internal bar code:ATAATTCTGTAGCTTCCGATAA

Confirmation - LEAP-Seq

LEAP-Seq distance:258
LEAP-Seq percent confirming:31.25
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:TTGCGGGTTCTGTCCATCTC
Suggested primer 2:CACGCACACACACACTCTTG