Insertion junction: CLIP2.027621_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.027621
Chromosome:chromosome 9
Location:3450348
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00132499

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCAGAATGCATGGGGCTCCCCGCTCCTGAAACCCGGCGGAACCCCACAG
Internal bar code:GACTCCCGCTGTTCTTAGTAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1811
LEAP-Seq percent confirming:71.1111
LEAP-Seq n confirming:32
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:45

Suggested primers for confirmation by PCR

Suggested primer 1:CCTGTACAGCAGTGGAAGCA
Suggested primer 2:CATACTGCAACGCCATGCTC