Insertion junction: CLIP2.027783_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.027783
Chromosome:chromosome 7
Location:3312044
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g334700 ATG101 (1 of 1) PF07855 - Protein of unknown function (DUF1649) (DUF1649); Autophagy-related protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCTGCTCGTACCCCCAACCCGACACAGGTTGACAAGCGTCCCGCGGACC
Internal bar code:AGTTAAGCGATGTCAAATGGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:472
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:CAGTAGAGCCGCTCATCCTG
Suggested primer 2:TTCCAAAGGACGTGGACTCG