Insertion junction: CLIP2.027855_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.027855
Chromosome:chromosome 10
Location:1463842
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g428400 PUS7 (1 of 2) 5.4.99.24 - 23S rRNA pseudouridine(955/2504/2580) synthase; RNA pseudouridine synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCGCCTTGCACCACAGACTGTTTTAACCCCCCCCAACTGTCCCCCAACT
Internal bar code:GAAGGTATGGCCCGTCAAATGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1091
LEAP-Seq percent confirming:90.9091
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:CGCTTCCCCCATCACTGAAT
Suggested primer 2:AGTCACATCCCTCTAGCCGT