Insertion junction: CLIP2.027942_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.027942
Chromosome:chromosome 1
Location:2135243
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g800038 (1 of 3) IPR000953//IPR016197 - Chromo/chromo shadow domain // Chromo domain-like intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCGCAACCGGCCTCCCCAGCGCACCCAGCAGAGGACAATCGCACCCCTG
Internal bar code:GAGCTGCGCGGATTTCAGCTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:3044
LEAP-Seq percent confirming:98.2759
LEAP-Seq n confirming:57
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:58

Suggested primers for confirmation by PCR

Suggested primer 1:ATCATGGACGAGGTGGAGGA
Suggested primer 2:ACATCCTCGGCAAGTGTGAG