Insertion junction: CLIP2.028041_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.028041
Chromosome:chromosome 3
Location:4665343
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g177100 (1 of 10) PTHR31867:SF1 - EXPANSIN-A1-RELATED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTCGTCACCAGTGACGACCGCGACGCACCCAACGCCAACGGCACCATCC
Internal bar code:TCACTTTGAGCGTATGCGGTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:915
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:GACTCATCAGCTACCGCTCC
Suggested primer 2:CAGTGGGATGCTGTGTACGT