Insertion junction: CLIP2.028234_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.028234
Chromosome:chromosome 1
Location:5453010
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g038550 SQD2 Sulfoquinovosyldiacylglycerol synthase; (1 of 2) K06119 - sulfoquinovosyltransferase (SQD2) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACACCCTAGCCTGGGGCCTGCACACCCCGAGCGCCTCTCCGGAGCGCTCA
Internal bar code:TTGTCGTAATGCGGTTTTTCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2331
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:55
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:55

Suggested primers for confirmation by PCR

Suggested primer 1:ACAAAGATGCAAACGCGCTT
Suggested primer 2:CTAGGGTTTGCGCCAGAGAA