Insertion junction: CLIP2.028282_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.028282
Chromosome:chromosome 15
Location:1453581
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre15.g641750 (1 of 3) PF05495 - CHY zinc finger (zf-CHY) intron
lncRNA_TCONS_00236644 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAAGGGGAAGGGCTGCAGGGGTGAATGACAAAGGGAGCAAGCGGCTGATG
Internal bar code:CGGGCGGAGGAAGGTGTAAGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1639
LEAP-Seq percent confirming:92.8571
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:TTCCTCTCGCTGCACTTGAG
Suggested primer 2:ATCCTCACTCTGGTACGGCT