Insertion junction: CLIP2.028361_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.028361
Chromosome:chromosome 2
Location:1796478
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g800183 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGTGTGTTGGGTGTGTGCGGTCTGCTGCCGTACGTGCCCCCGTGGACCC
Internal bar code:GCCCGGTCTCGATATCCAGGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:4898
LEAP-Seq percent confirming:42.4242
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:19
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:ACATTTCCCCACACGCTTCA
Suggested primer 2:TCTTTTCTGCTCGCGTGTCT