Insertion junction: CLIP2.028646_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.028646
Chromosome:chromosome 2
Location:1796172
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g800183 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATCGCGCGCATGCCCGTGTCCATGTTTGGTCGGGCGGCCGCGGCGTCGG
Internal bar code:TGGCCAGTGTCGCAGGGGCGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:3173
LEAP-Seq percent confirming:11.7647
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:30
LEAP-Seq n unique pos:34

Suggested primers for confirmation by PCR

Suggested primer 1:ACATTTCCCCACACGCTTCA
Suggested primer 2:TCTTTTCTGCTCGCGTGTCT