Insertion junction: CLIP2.028728_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.028728
Chromosome:chromosome 9
Location:6380791
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g414550 CSR7 Carbohydrate sulfotransferase-related 7; (1 of 1) 2.8.2.33//2.8.2.8 - N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase / GalNAc4S-6ST // [Heparan sulfate]-glucosamine N-sulfotransferase / PAPS:N-desulfoheparin sulfotransferase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACACTCACGTAGCAGCCGCGGGCGTTGTACACGGTGGCAATCTGCGTCTG
Internal bar code:ATGGGCTGCGTTGCATTCTTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1319
LEAP-Seq percent confirming:45.4545
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:CTCTGTAGCTGATCCAGGCG
Suggested primer 2:CGGTTTGGGCAACGTTCAAT