Insertion junction: CLIP2.028777_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.028777
Chromosome:chromosome 3
Location:4774028
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g177800 (1 of 10) PTHR31867//PTHR31867:SF1 - FAMILY NOT NAMED // EXPANSIN-A1-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCATGGAGGGGTAGGTCCGGATACTACCGGCACCGCTTTTGTGCATGGCT
Internal bar code:ACGGGGTTGGGTGCCTTTGATT

Confirmation - LEAP-Seq

LEAP-Seq distance:2983
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:TCACTTGCTGACGCTCCATT
Suggested primer 2:CCTTCTTGGGAGTCCAGCTG