Insertion junction: CLIP2.028798_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.028798
Chromosome:chromosome 6
Location:1513414
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g260700 XUV1,UAPA6 (1 of 2) K06901 - putative MFS transporter, AGZA family, xanthine/uracil permease (pbuG); Xanthine/uracil/vitamin C permease-like intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACACGGTACCCTAGGGACTCGCTGGGAGTACTGGCACACACACACACAC
Internal bar code:GTTACCATACAAAGGTCACGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:908
LEAP-Seq percent confirming:77.7778
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:CAATCTGCGTGATCTTGCCG
Suggested primer 2:GCGCACGCTTCCTATCTAGT