Insertion junction: CLIP2.028833_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.028833
Chromosome:chromosome 3
Location:7932970
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g202300 (1 of 3) IPR000104//IPR001859 - Antifreeze protein, type I // Trypanosoma cruzi ribosomal protein P2-like CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCTGGGGCCGGAGCCGGAGGGCGGCTGGCCCGACCCAGATGCCGACAGC
Internal bar code:GTTTGTCGATCAATTGTATCCT

Confirmation - LEAP-Seq

LEAP-Seq distance:1865
LEAP-Seq percent confirming:94.1176
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:CGGCTTTTGTTGGTGATGCA
Suggested primer 2:TACAAGTTTCGAAGCGCCCT