Insertion junction: CLIP2.028858_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.028858
Chromosome:chromosome 16
Location:7160512
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g676421 TOC1,PRR1 Pseudo Response Regulator 1; (1 of 1) PTHR26402//PTHR26402:SF465//PTHR31319 - RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM // TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1-RELATED // FAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCTGCCACAAACAGCGGCCCCACCACGGCAAATGGAGGAGTCTAGATGT
Internal bar code:TCACGTGGGTTAATATAACCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1918
LEAP-Seq percent confirming:4.54545
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:21
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:CGGGACAGTAGGGTTTGCAT
Suggested primer 2:ACAGTCCATGTCCACGTGTC