Insertion junction: CLIP2.028984_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.028984
Chromosome:chromosome 9
Location:3451551
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00132499

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGTGTAAAGGCTCAGCAAAGGCACCATGGGGCACCGCTGCTTGCCTCGC
Internal bar code:ACCCGGACAACAGCGTACATAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1365
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:ATCCCCGGTCATAGGTTGGA
Suggested primer 2:TTGGCGTACAGGATTGTGCT