Insertion junction: CLIP2.029288_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.029288
Chromosome:chromosome 9
Location:4935097
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g403219 RPB5 DNA-directed RNA polymerase II, 23 kDa polypeptide; (1 of 1) K03013 - DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RPB5, POLR2E) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGGCGTGATTGGGAGTTGGGGGGAGGGAGAGAGGCGGGGCAACTTGGCG
Internal bar code:CGTAGCTCCTTCGTTAGCGCCC

Confirmation - LEAP-Seq

LEAP-Seq distance:2512
LEAP-Seq percent confirming:91.5254
LEAP-Seq n confirming:54
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:59

Suggested primers for confirmation by PCR

Suggested primer 1:GGGTCGGGCAGTTGTAATCA
Suggested primer 2:TACTCGTATGTCCCCACCGT