Insertion junction: CLIP2.029811_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.029811
Chromosome:chromosome 1
Location:5696213
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00249475

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACTAACCTGATTTCTACGCGACACCGCTTTATTTCCCGTGCAGTGAGCC
Internal bar code:TTAGTGGTGTCCCGAACTATCG

Confirmation - LEAP-Seq

LEAP-Seq distance:3187
LEAP-Seq percent confirming:87.1795
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:TTGAGCTGCTCCTTCAGGTG
Suggested primer 2:TGTTTGTGTGGTCACCAGCT