Insertion junction: CLIP2.030332_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.030332
Chromosome:chromosome 17
Location:1656667
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g802042 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCTTTCGCGGATTTGTTCGCTCTGCCGGGACTGGCGTGTGTGGGCCAG
Internal bar code:TTGTCTCGGCGTTAGTTTTCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:3273
LEAP-Seq percent confirming:37.2093
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:27
LEAP-Seq n unique pos:43

Suggested primers for confirmation by PCR

Suggested primer 1:ACAGTGCAGTCCCAAAACCA
Suggested primer 2:GACATGGATGTGTTTCGGCG