Insertion junction: CLIP2.030446_3

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.030446
Chromosome:chromosome 16
Location:5857332
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g679650 (1 of 1) PTHR19961:SF18 - FI19014P1 3'UTR
Cre16.g679700 (1 of 239) IPR016024 - Armadillo-type fold 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGTTACAAGTACGATTGTCGGCTCCGTTAGCACAGAGTAGCTGTTGAGC
Internal bar code:AGCCTAGCTTGTATGGGATTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:828
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:GCTTTGTGTTCTGTGGCCTG
Suggested primer 2:TCTTCCTAGGCTGGGAGGAC