Insertion junction: CLIP2.030464_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.030464
Chromosome:chromosome 10
Location:2771472
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g801135 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCTGACGCTATGCGCACTGTCCATCCACCGTATGCAGTTTTTGCTCAAT
Internal bar code:GATCGGCCCGAGGGGGGGGCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:3054
LEAP-Seq percent confirming:25.974
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:57
LEAP-Seq n unique pos:77

Suggested primers for confirmation by PCR

Suggested primer 1:GGACCTGACTTGCACTTCGA
Suggested primer 2:CGAATTAGTCTCCCGGCGAA