Insertion junction: CLIP2.030480_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.030480
Chromosome:chromosome 9
Location:2408897
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g393650 (1 of 1) PF00069//PF01590 - Protein kinase domain (Pkinase) // GAF domain (GAF) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGTCTGAACCTCCCACGCGGAGGCACGGCGTCATTGTATACTGGGCCTT
Internal bar code:CTATTGTGGGTGTCAGGCTGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1305
LEAP-Seq percent confirming:90.3226
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:CCGGGTCCTCCTGTAGAAGA
Suggested primer 2:AAGCCTACAGACCCACATGC