Insertion junction: CLIP2.030552_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.030552
Chromosome:chromosome 17
Location:5570440
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g739650 MAE1,MFT1 MATE efflux family protein; (1 of 5) PTHR11206//PTHR11206:SF94 - MULTIDRUG RESISTANCE PROTEIN // DNA-DAMAGE-INDUCIBLE PROTEIN F intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGCGCCGCCGCCCTTCAACCCCTCCATCGATTTGCCGCCGCCGTACAGT
Internal bar code:GGGAAGGCCGCAAATGTGCTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1686
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:CCATCCTGGCCTCCTTCATC
Suggested primer 2:GATGATGTGGGGAGAGCAGG