Insertion junction: CLIP2.030725_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.030725
Chromosome:chromosome 10
Location:6187791
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g462816 (1 of 2) IPR007112//IPR007117//IPR009009 - Expansin/pollen allergen, DPBB domain // Expansin, cellulose-binding-like domain // RlpA-like double-psi beta-barrel domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCACGCACCCACCCACCTCGCCCGCCGCGCCGAATCTGAAAGCGCGCGC
Internal bar code:TGGGTTCGCGGTGCCGGTCTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1971
LEAP-Seq percent confirming:86.3636
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:ATGAGTCCCGCGAATACGTC
Suggested primer 2:CGAGCCCAACGAGATAGGTC