Insertion junction: CLIP2.030740_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.030740
Chromosome:chromosome 4
Location:2844575
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g224200 (1 of 2) PTHR18841//PTHR18841:SF0 - VITELLINE MEMBRANE OUTER LAYER PROTEIN I-RELATED // PROTEIN C08G5.3, ISOFORM A-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCACCGTGGCCTGCTGCCAGCGGGGCGCAAACCGCGACGCGCCATAAGCA
Internal bar code:CGTGTAGGGGCTATTAGGGAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1347
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:GCCAAAATGGGAGCGCTAAG
Suggested primer 2:CAATGTGCCCCAGTACTCGT